Fig. 4
From: Automated identification of the mouse brain’s spatial compartments from in situ sequencing data
Spatial gene expression compartments are highly reproducible across brains. Visualization of 20 spatial compartments, with their annotations, defined by highly correlated clusters (right column). The annotations follow the Allen Mouse Brain Atlas (left column). For comparisons, we also provide the annotations by Franklin and Paxinos (central column). Note that brain sections are slightly angled medial-lateral as well as dorso-ventral. Sections from different mice are marked respectively with a star and a triangle in the top left corner. Scale bars, 1 mm