From: Assessing optimal: inequalities in codon optimization algorithms
Author or database | E. coli strain | Gene source | # CDS | # codons |
---|---|---|---|---|
Sharp and Li [8] a | Generic | GenBank | 27 | 6240 |
15 | 9223 | |||
57 | 25,010 | |||
58 | 22,612 | |||
Kazusa database [9] | Generic | GenBank | 8087 | 2,330,943 |
B | GenBank | 11 | 3771 | |
HIVE-CUT database [10] | Generic | GenBank and RefSeq | 68,262,063 | 20,219,118,236 |
B | GenBank and RefSeq | 13,042 | 3,953,593 | |
Generic | GenBank and RefSeq | 5011 | 1,538,003 | |
GenScriptb | Proprietary | Undefined | Undefined | Undefined |
Dong et al. [13] | W1485 (K12) | N/A | Total RNA | Undefined |