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Table 1 Genome assembly statistics for three strains of Verticillium dahliae

From: Dynamics of Verticillium dahliae race 1 population under managed agricultural ecosystems

Strain VdLs.16 JR2 VdLs.17
Genome assembly   Scaffold Contig Scaffold Contig Scaffold Contig
Total number 14 17 8 8 8 8
Total length of (bp) 36,092,517 36,089,483 36,150,287 36,150,287 35,973,870 35,973,870
Gap number (bp) 3034 0 0
Average length (bp) 2,578,037 2,122,911 4,518,786 4,518,786 4,496,734 4,496,734
N50 length (bp) 4,722,744 3,663,785 4,168,633 4,168,633 5,894,008 5,894,008
N90 length (bp) 2,532,149 2,375,583 3,361,230 3,361,230 3,290,897 3,290,897
Maximum length (bp) 8,087,087 8,087,087 9,275,483 9,275,483 6,210,300 6,210,300
Minimum length (bp) 50,807 41,068 3,277,570 3,277,570 3,272,870 3,272,870
GC content (%) 53.8 53.8 53.88 53.88 54 54
Genome prediction Protein-coding genes 10,799 10,875 10,825
Length of genes (bp) 18,863,221 19,050,607 19,146,372
Mean gene length (bp) 1,747 1752 1769
Gene GC % 58.56 58.49 58.46
Length of CDS (bp) 16,527,821 16,720,002 16,761,722
Mean length of CDS (bp) 1530 1537 1548
CDS GC % 59.41 59.31 59.29
Exon no. 31,232 31,303 31,696
Coding gene with introns 1.89 1.87 1.92
Mean exons per gene 2.89 2.87 2.92
Mean exons length (bp) 529 534 529
Intron no. 20,433 20,428 20,871
Mean intron length (bp) 114 114 114
Intron GC % 52.26 52.25 52.29
Mean intergenic length (bp) 1584 1571 1553
No. of transposons 4870 4665 5262
Total length of transposons (bp) 3,879,742 4,057,098 4,803,307
Percentage in genome 10.7494 11.2228 13.3522
Genome annotation Secretome 797 803 803
CAZymes 588 589 590
Pectin degradation 36 35 35
Cellulose degradation 84 84 82
Hemicellulose degradation 67 67 65
Ligin degradation 4 5 4
CAZymes (secreted) 266 268 270
SCRPs 302 313 297
LysM effectors 6 6 7
NLPs 7 7 8
Protein kinases 150 156 154
Transcription factors 432 482 500
PHI homologs 2797 2778 2789