Table 10 RNAi and 5mC methyltransferase genes in Pgt. For each protein, the identifiers of the allelic proteins on each haplotype are given. Homologs of the Pgt p7a PGTG_13081 and PGTG_13088 dicer proteins were not found in the gene annotation of Pgt 21-0
Gene annotation | Identifier | Pgt 21-0 proteins | Pgt p7a identifier |
|---|---|---|---|
Argonautes | Argonaute 1 | PGT21_021399 (chr14A) and PGT21_022388 (chr14B) | PGTG_08429 |
Argonaute 2 | PGT21_001976 (chr13A) and PGT21_002123 (chr13B) | PGTG_11327 | |
Dicer | Dicer 1 | PGT21_033256 (chr4A) and PGT21_033881 (chr4B) | PGTG_19535 |
Dicer 2 | PGT21_033021 (chr4A) and PGT21_033709 (chr4B) | PGTG_19538 | |
Dicer 3 | PGT21_029367 (chr6A) and PGT21_028061 (chr6B) | PGTG_12289 | |
Dicer 4 | – | PGTG_13081 | |
Dicer 5 | – | PGTG_13088 | |
RdRPs | RdRP 1 | PGT21_002642 (chr10A) and PGT21_001684 (chr10B) | PGTG_20838 |
RdRP 2 | PGT21_009430 (chr15A) and PGT21_009102 (chr15B) | PGTG_17766 | |
RdRP 3 | PGT21_009651 (chr14A) and PGT21_011158 (chr14B) | PGTG_02834 | |
RdRP 4 | PGT21_031631 (chr4A) and PGT21_032301 (chr4B) | PGTG_05092 | |
RdRP 5 | PGT21_031875 (chr8A) and PGT21_035256 (chr16B) | PGTG_09533 | |
5mC MTases | DNMT1 | PGT21_014413 (chr4B) and PGT21_012711 (chr4A) | PGTG_03742 |
DNMT5 | PGT21_036642 (chr1A) and PGT21_037052 (chr1B) | PGTG_17071 |