Fig. 5
From: Lost genome segments associate with trait diversity during rice domestication
GWAS of grain length, grain width, the ratio of grain length to grain width, grain weight, primary branch, secondary branch, plant height, flag leaf length, flag leaf width, and the angle of flag leaf for 649 rice accessions based on SVs. a Plots of significant associated sites with the nine traits on chromosomes. b Manhattan plot of grain width using SV-GWAS on chromosome 5. c SV results in the presence and absence of Nipponbare (NIP) and 9311. d Haplotype frequencies in cultivated and wild rice. e Comparison of the grain width variation between the two haplotypes of the 1200-bp SV