Table 2 Summary of SNP effect impacts for each new genome versus the IPO323 reference gene models
Genomes ID_Rothamsted | Effect impact | Total | |||||
|---|---|---|---|---|---|---|---|
High | Percentage | Moderate | Percentage | Low | Percentage | ||
Zt10 | 6815 | 4.1% | 58739 | 35.5% | 99990 | 60.4% | 165544 |
Zt36 | 7399 | 4.4% | 60053 | 36.0% | 99540 | 59.6% | 166992 |
Zt48 | 7078 | 4.2% | 59965 | 35.8% | 100606 | 60.0% | 167649 |
Zt55 | 7138 | 4.4% | 58214 | 36.2% | 95649 | 59.4% | 161001 |
Zt71 | 7562 | 4.4% | 62825 | 36.6% | 101147 | 59.0% | 171534 |
Zt74 | 7316 | 4.4% | 59848 | 36.0% | 98888 | 59.6% | 166052 |
Zt80 | 7284 | 4.3% | 59782 | 35.7% | 100445 | 60.0% | 167511 |
Zt88 | 6366 | 4.0% | 56121 | 34.9% | 98214 | 61.1% | 160701 |
Zt92 | 6935 | 4.2% | 58167 | 35.5% | 98688 | 60.3% | 163790 |
Zt93 | 6792 | 4.2% | 56879 | 35.0% | 99024 | 60.9% | 162695 |
Zt97 | 7882 | 4.5% | 63045 | 36.3% | 102840 | 59.2% | 173767 |
Zt99 | 7391 | 4.5% | 58866 | 35.6% | 99195 | 60.0% | 165452 |
Zt114 | 6995 | 4.2% | 59916 | 35.7% | 100932 | 60.1% | 167843 |
Zt116 | 7505 | 4.4% | 61918 | 36.2% | 101548 | 59.4% | 170971 |
Zt117 | 7358 | 4.4% | 59680 | 35.7% | 100190 | 59.9% | 167228 |
Zt118 | 7361 | 4.3% | 61412 | 36.2% | 100901 | 59.5% | 169674 |
Zt120 | 6612 | 4.1% | 57623 | 35.3% | 98796 | 60.6% | 163031 |