Table 1 Comparison of genome features of two versions of Sapria himalayana
From: The Sapria himalayana genome provides new insights into the lifestyle of endoparasitic plants
Feature | S. himalayana (in the study) | S. himalayana (Cai et al., 2021) |
|---|---|---|
Technology | PacBio/10X/Illumina | Nanopore/Illumina |
Final assemble genome size | 1.92Â Gb | 1.28Â Gb |
Assembly completion (%) | 70% | 40% |
Contig number and N50 | 26,955 (N50: 104.22Â Kb) | 216,625 (19.95Â Kb) |
Scaffold number and N50 | 18,718 (N50: 245.75Â Kb) | 128,027 (N50: 952.63Â Kb) |
NG50 | 112.61Â Kb | 29.62Â Kb |
Repeat motif (%) | 86.41% | 89.6% |
GC content (%) | 27.47% | 24% |
Gene number | 13,670 | 55,179 (42,512 authentic) |
BUSCO (1,440, Embryophytes) | 47.9% | 44.6% |
Nuclear HGT number (phylogenomic analysis) | 98 | 90 |