Fig. 2

Leptoseris and Agaricia. a Phylogenetic tree (RAxML-ng) of the genus Leptoseris based on 15,250 concatenated nextRAD loci. b Phylogenetic tree (RAxML-ng) of the genus Agaricia based on 19,902 concatenated nextRAD loci. Colours across the trees represent the different identified clades (across phylogenetic and clustering methods) using blue, turquoise, purple, and green colours to represent the taxonomic species and shades of the different subclades. Columns next to the tree correspond to the taxonomic identification, sampling location, and sampling depth. The summary column on the right outlines the consensus taxonomic identification of each clade, and pie charts summarise the sampling depths and locations. The right-most column indicates the assignment based on the DELINEATE analyses (more details in Additional file 2: Figure S9; S10)