Table 1 Top ten Weir and Cockerham’s Fst outlier loci identified across all sampled populations using Arlequin, and their homology to known functional genes from GenBank
From: Global patterns of genomic and phenotypic variation in the invasive harlequin ladybird
Chromosome | SNP position | Locus | Obs. Het. BP | Obs FST | P-value | Location | Protein |
|---|---|---|---|---|---|---|---|
Original_scaffold_1348 | 5,014,802 | 6747 | 0.202924 | 0.882225 | 0.00E + 00 | Downstream of LOC123671460 | Probable ATP-dependent RNA helicase spindle-E |
FragScaff_scaffold_198 | 4,590,085 | 4739 | 0.211016 | 0.875361 | 1.05E − 299 | Unknown | Unknown |
Original_scaffold_540 | 399,348 | 6068 | 0.190675 | 0.854398 | 1.05E − 273 | Downstream of LOC123686084 | piggyBac transposable element-derived protein 3-like |
FragScaff_scaffold_198 | 4,755,908 | 4743 | 0.214471 | 0.849187 | 3.44E − 267 | Unknown | Unknown |
FragScaff_scaffold_198 | 5,597,777 | 4767 | 0.165288 | 0.775155 | 1.02E − 216 | LOC123685704 | Procathepsin L-like (LOC123685704), transcript variant X2, mRNA |
Original_scaffold_1348 | 1,942,409 | 6691 | 0.23695 | 0.79731 | 1.57E − 208 | Downstream of LOC123671460 | Probable ATP-dependent RNA helicase spindle-E |
Original_scaffold_1348 | 3,619,473 | 6711 | 0.226716 | 0.773365 | 8.86E − 184 | Downstream of LOC123671460 | Probable ATP-dependent RNA helicase spindle-E |
Original_scaffold_1348 | 4,905,076 | 6744 | 0.221071 | 0.76982 | 3.08E − 180 | No match | No match |
FragScaff_scaffold_60 | 2,102,089 | 1125 | 0.239309 | 0.758214 | 3.51E − 169 | Upstream of pnr locus | Uncharacterized protein LOC123676881 |