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Fig. 5 | BMC Biology

Fig. 5

From: Genomic insights into biased allele loss and increased gene numbers after genome duplication in autotetraploid Cyclocarya paliurus

Fig. 5

Population clustering and demographic history of C. paliurus. a Geographic locations of 118 C. paliurus samples from 21 populations. b Results of mixed-ploidy STRUCTURE analysis of 118 C. paliurus samples at K = 2. c The maximum likelihood phylogeny tree of 118 individuals and four outgroups with 7013 nuclear single-copy genes. A total of 105 autotetraploids clustered into one clade, and 12 diploids and one autotetraploid clustered into the other clade. Bootstrap support values are labeled on each branch. d Changes in effective population size over time for 12 diploid samples estimated with PSMC. e The divergence times and effective population sizes for autotetraploids and diploids were estimated using fastsimcoal2. The 95% parametric bootstrap CIs are specified in square brackets

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BMC Biology

ISSN: 1741-7007

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