From: Diversity of RNA viruses in the cosmopolitan monoxenous trypanosomatid Leptomonas pyrrhocoris
Country | City | Trypanosomatid prevalence | Positive for dsRNA/tested | Isolate | Fragments on the gel [kb] | Viral identity | NGS |
---|---|---|---|---|---|---|---|
Belarus | Vitebsk | 8/8 (100%) | 1/3 | BY-Vi257 | |||
BY-Vi260 | 3.5, 2.2 | TLV | Yes | ||||
BY-Vi262 | |||||||
Czechia | Benešov | 4/7 (57%) | 0/2 | CZ-Be02 | |||
CZ-Be04 | |||||||
Brno | 7/10 (70%) | 2/3 | CZ-Br01 | 3.5, 2.2 | TLV | ||
CZ-Br02 | 3.5, 2.2 | TLV, OVa, LBV1/2/4a | Yes | ||||
CZ-Br07 | |||||||
České Budějovice | 16/25 (64%) | 0/4 | CZ-CB02 | ||||
CZ-CB03 | |||||||
CZ-CB13 | |||||||
CZ-CB16 | |||||||
Hradec nad Moravicí | 12/16 (75%) | 9/9 | CZ-HM01 | 3.5, 2.2 | TLV, LBV3a | Yes | |
CZ-HM02 | 3.5, 2.2 | TLV | Yes | ||||
CZ-HM03 | 3.5, 2.2 | TLV | |||||
CZ-HM04 | 3.5, 2.2 | TLV | Yes | ||||
CZ-HM05 | 3.5, 2.2 | TLV | |||||
CZ-HM06 | 3.5, 2.2 | TLV | Yes | ||||
CZ-HM07 | 3.5, 2.3 | TLV | |||||
CZ-HM08 | 3.5, 2.2 | TLV | Yes | ||||
CZ-HM09 | 3.5, 2.2 | TLV | Yes | ||||
Ostrava | 24/30 (80%) | 11/13 | CZ-Os00 | 3.5, 2.2 | TLV | ||
CZ-Os01 | 3.5, 2.2 | TLV | |||||
CZ-Os02 | 3.5, 2.2 | TLV | |||||
CZ-Os03 | 3.5, 2.2 | TLV | Yes | ||||
CZ-Os05 | 3.5, 2.2 | TLV | |||||
CZ-Os07 | 3.5, 2.2 | TLV | |||||
CZ-Os08 | 3.5, 2.2 | TLV | |||||
CZ-Os10 | 3.5, 2.2, 5, 4.2, 4, 3, 2.4, 1.6, 1.3 | TLV, OV | |||||
CZ-Os11 | 3.5, 2.2 | TLV | Yes | ||||
CZ-Os12 | 3.5, 2.2 | TLV | |||||
CZ-Os13 | |||||||
CZ-Os14 | |||||||
CZ-Os15 | 3.5, 2.2, 5.0, 4.2, 4.0, 3.0, 2.4, 1.6, 1.3 | TLV, OV | |||||
Prague | 12/21 (57%) | 1/3 | CZ-Pr02 | ||||
CZ-Pr14 | 3.5, 2.2, 5.0, 4.2, 4.0, 3.0, 2.4, 1.6, 1.3, 6.2, 1.9, 1.5 | TLV, OV, LBV3 | Yes | ||||
Cz-Pr24 | |||||||
Germany | Jena | 3/4 (75%) | 1/1 | DE-Je02 | 3.5, 2.2 | TLV | Yes |
Hungary | Varbó | 10/16 (62%) | 2/3 | HU-Va04 | 3.5, 2.2 | TLV | Yes |
HU-Va05 | 6.2, 1.9, 1.5 | LBV3 | Yes | ||||
HU-Va09 | |||||||
Italy | Grosseto | 11/28 (39%) | 2/3 | IT-Gr06 | 3.5, 2.2 | TLV | |
IT-Gr07 | 3.5, 2.2 | TLV | |||||
IT-Gr10 | |||||||
Rome | 8/30 (27%) | 6/8 | IT-Ro01 | 3.5, 2.2 | TLV | Yes | |
IT-Ro02 | 3.5, 2.2 | TLV | |||||
IT-Ro03 | |||||||
IT-Ro04 | 3.5, 2.2 | TLV | |||||
IT-Ro05 | |||||||
IT-Ro06 | 3.5, 2.2 | TLV | Yes | ||||
IT-Ro07 | 3.5, 2.2 | TLV | |||||
IT-Ro08 | 3.5, 2.2 | TLV | |||||
Lithuania | Vilnius | 8/8 (100%) | 3/3 | LT-Vi06 | 3.5, 2.2 | TLV | Yes |
LT-Vi08 | 3.5, 2.2 | TLV | Yes | ||||
LT-Vi09 | 3.5, 2.2, 6.2, 1.9, 1.5 | TLV, LBV3 | Yes | ||||
Poland | Rzeszów | 18/20 (90%) | 3/6 | PL-Rz05 | |||
PL-Rz06 | 3.5, 2.2, 5.0, 4.2, 4.0, 3.0, 2.4, 1.6, 1.3, 6.2, 1.9, 1.5 | TLV, OV, LBV3 | Yes | ||||
PL-Rz11 | |||||||
PL-Rz12 | |||||||
PL-Rz13 | 3.5, 2.2 | TLV | Yes | ||||
PL-Rz18 | 6.2, 1.9, 1.5 | LBV3 | Yes | ||||
Portugal | Lisbon | 6/13 (46%) | 4/5 | PT-Li02 | 3.5, 2.2 | TLV | |
PT-Li03 | 3.5, 2.2 | TLV | Yes | ||||
PT-Li04 | 3.5, 2.2 | TLV | |||||
PT-Li05 | |||||||
PT-Li06 | 3.5, 2.2, 6.2, 3.2, 1.8 | TLV, LBV4 | Yes | ||||
Romania | Luncavița | 2/6 (33%) | 1/1 | RO-Lu01 | 3.5, 2.2 | TLV | |
Russia | Borisovka | 8/8 (100%) | 0/1 | RU-Bo01 | |||
Krasnodar | 11/11 (100%) | 1/2 | RU-Kr01 | 3.5, 2.2, 6.2, 1.9, 1.5 | TLV, LBV3, OVa | Yes | |
RU-Kr02 | |||||||
Moscow | 14/17 (82%) | 4/4 | RU-Mo01 | 3.5, 2.2 | TLV | Yes | |
RU-Mo02 | 3.5, 2.2 | TLV | Yes | ||||
RU-Mo202 | 3.5, 2.2 | TLV | |||||
RU-Mo203 | 3.5, 2.2 | TLV | Yes | ||||
Pskov | 92/92 (100%) | 0/3 | RU-Ps01 | ||||
RU-Ps02 | |||||||
RU-Ps03 | |||||||
Suyda | 10/11 (91%) | 1/1 | RU-Su01 | 3.5, 2.2 | TLV | Yes | |
Serbia | Dimitrovgrad | 12/15 (80%) | 2/4 | SE-Dm02 | |||
SE-Dm03 | |||||||
SE-Dm04 | 3.5, 2.2 | TLV | Yes | ||||
SE-Dm07 | 3.5, 2.2, 6.2 | TLV, LBVb,c | |||||
Subotica | 10/13 (77%) | 3/7 | SE-Sb01 | ||||
SE-Sb02 | 3.5, 2.2, 6.2, 1.9, 1.5 | TLV, LBV2/3/4 | Yes | ||||
SE-Sb03 | |||||||
SE-Sb04 | |||||||
SE-Sb06 | 3.5, 2.2 | TLV | |||||
SE-Sb07 | 3.5, 2.2, 6.2, 1.9, 1.5 | TLV, QINa, LBV2/3/4 | Yes | ||||
SE-Sb09 | |||||||
Slovakia | Bratislava | 25/30 (83%) | 4/5 | SK-Br02 | 3.5, 2.2, 6.2 | TLV, LBV2b | Yes |
SK-Br05 | 3.5, 2.2 | TLV | Yes | ||||
SK-Br18 | 3.5, 2.2 | TLV | |||||
SK-Br20 | 3.5, 2.2 | TLV | |||||
SK-Br24 | |||||||
Košice | 9/20 (45%) | 0/1 | SKK6 | ||||
Liptovský Hrádok | 7/10 (70%) | 0/3 | SK-LH01 | ||||
SK-LH04 | |||||||
SK-LH06 | |||||||
Ľubochňa | 18/25 (72%) | 0/4 | SK-Lu01 | ||||
SK-Lu10 | |||||||
SK-Lu15 | |||||||
SK-Lu16 | |||||||
Ukraine | Zaporizhzhia | 9/14 (64%) | 3/4 | UA-Zp01 | 3.5, 2.2, 5.0, 4.2, 4.0, 3.0, 2.4, 1.6, 1.3 | TLV, OV | Yes |
UA-Zp02 | 3.5, 2.2 | TLV, OVa, QINa | Yes | ||||
UA-Zp03 | 3.5, 2.2 | TLV | Yes | ||||
UA-Zp04 | |||||||
Total | 374/508 (74%) | 64/106 (60%) | 61 TLV, 13 LBV, 8 OV, 2 QIN | 37 |