Table 2 Gene prediction and annotation statistics for the Berghia stephanieae genome, including initial gene models predicted from BRAKER (pre-filtering) and filtered gene models intended to include only those models with external support (post-filtering)
| Â | Initial prediction | Filtered predictions |
|---|---|---|
Gene models—BRAKER2 | ||
 No. of genes | 59,494 | 24,960 |
 Average gene length (AA) | 327.13 | 441 |
 No. of predicted proteins | 61,662 | 26,595 |
 % start codon | 99.85% | 99.73% |
 % stop codon | 99.91% | 99.82% |
BUSCO results—protein | ||
 Metazoa odb10 | C:87.2%[S:82.9%,D:4.3%],F:8.6%,M:4.2%,n:954 | C:86.0%[S:81.8%,D:4.2%],F:8.7%,M:5.3%,n:954 |
 Mollusca odb10 | C:73.8%[S:67.3%,D:6.5%],F:6.5%,M:19.7%,n:5295 | C:72.2%[S:65.9%,D:6.3%],F:6.2%,M:21.6%,n:5295 |
% reads aligned | ||
 Bulk RNA-seq | 74.81% | 74.81% |
 IsoSeq | 97.75% | 95.23% |
Gene model functional annotations | ||
 BLASTP annotations | ||
   Predicted genes annotated | 34,594 (58.1%) | 19,425 (77.8%) |
   Predicted proteins annotated | 36,259 (58.8%) | 20,820 (78.3%) |
 InterProScan annotations | ||
   Predicted genes annotated | 46,535 (78.2%) | 22,914 (91.8%) |
   Predicted proteins annotated | 48,501 (78.7%) | 24,469 (92.0%) |