Giardia intestinalis mitosomes undergo synchronized fission but not fusion and are constitutively associated with the endoplasmic reticulum
© Dolezal et al. 2017
Received: 8 December 2016
Accepted: 1 March 2017
Published: 3 April 2017
Mitochondria of opisthokonts undergo permanent fission and fusion throughout the cell cycle. Here, we investigated the dynamics of the mitosomes, the simplest forms of mitochondria, in the anaerobic protist parasite Giardia intestinalis, a member of the Excavata supergroup of eukaryotes. The mitosomes have abandoned typical mitochondrial traits such as the mitochondrial genome and aerobic respiration and their single role known to date is the formation of iron–sulfur clusters.
In live experiments, no fusion events were observed between the mitosomes in G. intestinalis. Moreover, the organelles were highly prone to becoming heterogeneous. This suggests that fusion is either much less frequent or even absent in mitosome dynamics. Unlike in mitochondria, division of the mitosomes was absolutely synchronized and limited to mitosis. The association of the nuclear and the mitosomal division persisted during the encystation of the parasite. During the segregation of the divided mitosomes, the subset of the organelles between two G. intestinalis nuclei had a prominent role. Surprisingly, the sole dynamin-related protein of the parasite seemed not to be involved in mitosomal division. However, throughout the cell cycle, mitosomes associated with the endoplasmic reticulum (ER), although none of the known ER-tethering complexes was present. Instead, the ER–mitosome interface was occupied by the lipid metabolism enzyme long-chain acyl-CoA synthetase 4.
This study provides the first report on the dynamics of mitosomes. We show that together with the loss of metabolic complexity of mitochondria, mitosomes of G. intestinalis have uniquely streamlined their dynamics by harmonizing their division with mitosis. We propose that this might be a strategy of G. intestinalis to maintain a stable number of organelles during cell propagation. The lack of mitosomal fusion may also be related to the secondary reduction of the organelles. However, as there are currently no reports on mitochondrial fusion in the whole Excavata supergroup, it is possible that the absence of mitochondrial fusion is an ancestral trait common to all excavates.
The mitochondria of opisthokonts are dynamic cellular compartments that undergo constant fusion and division events . These processes control mitochondrial morphology and ensure that the mitochondrial network remains homogenous across the cell .
GTPases from the dynamin superfamily have a central role in controlling mitochondrial dynamics. The division apparatus relies on the function of the soluble dynamin-related protein Drp1/Dnm1 , which is recruited to the mitochondrial surface by several membrane-anchored proteins, such as Fis1 and Mff [4, 5]. The opposing fusion processes require the membrane-anchored, dynamin-related proteins mitofusins/Fzo1  and Opa1/Mgm1  in the outer and inner mitochondrial membranes, respectively. However, information on the fusion and its apparatus is limited to animals and fungi. Whether mitochondria of other lineages of eukaryotes also fuse remains largely unknown.
Recent studies have shown the prominent role of the endoplasmic reticulum (ER) tubules in mitochondrial dynamics in fungal and mammalian cells [8–11]. Different molecular tethers between the ER and the mitochondria have been functionally described in both fungi [11–14] and mammalian cells , although for the latter the data have been questioned recently .
The transformation of endosymbiotic alphaproteobacteria into current-day mitochondria involved a redesign of their division apparatus. The bacterial divisome complex, which is built around the polymers of a tubulin ortholog, the GTPase FtsZ, has been entirely replaced in the mitochondria of many eukaryote lineages by proteins of the dynamin superfamily ; yet, eukaryotes that have preserved the original FtsZ-based machinery can still be found in all eukaryotic supergroups [18, 19].
Our detailed understanding of the molecular background of mitochondrial dynamics in opisthokonts is in sharp contrast to what is known about the rest of eukaryotic diversity. So far only a handful of eukaryotic species have been shown to employ dynamin-related proteins for mitochondrial division. Of the Excavata supergroup, which comprises a large collection of protist taxons, these include the parasitic kinetoplastid Trypanosoma brucei [20, 21] and the parabasalid Trichomonas vaginalis, the latter of which carries mitochondria-related organelles (MRO) known as hydrogenosomes . Mitochondrial fusion has not been examined in any Excavata species so far, and neither have the orthologs of components of the fusion machinery been identified [23, 24].
Mitosomes represent the simplest form of MROs, which have independently arisen through convergent simplification in several protist lineages that inhabit oxygen-poor environments [25, 26]. While mitosomes have retained a double membrane, they have abandoned their mitochondrial genome and have dramatically reduced their proteome [27, 28].
Giardia intestinalis is an intestinal protist parasite of humans and other vertebrates and has been studied for a number of its unique cellular features, including the mitosomes [29, 30]. About 40–50 tiny mitosome vesicles are stably present in the active, motile stage of the parasite (trophozoite), with a prominent array of the organelles, referred to as central mitosomes, between the two nuclei of the trophozoite cell [31–33]. Mitosomes do not produce ATP, and their only identified metabolic role is in the formation of iron–sulfur clusters .
In this study, we investigated the dynamics of G. intestinalis mitosomes. We show that mitosomes are extremely steady organelles that do not fuse, and that their division is uniquely synchronized with mitosis. Mitosomes also divide in the encysting cell; thus, the infectious cyst contains two sets of organelles, which may facilitate rapid cytokinesis upon excystation in a newly infected host. Surprisingly, G. intestinalis mitosomes seems not to rely on dynamin-related protein during division but they associate with the ER throughout the cell cycle. The regions of contact between these two organelles are enriched for the lipid metabolic enzyme long-chain acyl-CoA synthetase 4 (LACS4), suggesting that the contacts define the sites of the lipid transport to the mitosomes.
Mitosomes undergo neither fusion nor division during interphase
The live-cell fluorescence microscopy is hampered by weak fluorescence of green fluorescent protein (GFP) and its derivatives, which require the presence of oxygen to form the fluorescent tripeptide. Therefore, to follow the mitosomal dynamics in live cells, attached G. intestinalis trophozoites were observed using Halo-ligand-labeled mitosomal IscU . The number of independent observations (e.g., Fig. 1b) showed no changes in the distribution or morphology of the organelles. This result suggests that mitosomes do not undergo division during interphase. Moreover, the lack of observable fusion among the mitosomes indicated that this behavior is either much less frequent or even absent in G. intestinalis.
Similarly, the cells were also grown with increasing concentrations of metronidazole, a 5-nitroimidazole antibiotic used to treat infections of anaerobic organisms including Giardia . The compound is activated by electron transfer from low-redox-potential electron donors such as ferredoxins  and, for instance, induces morphological changes to hydrogenosomes of Trichomonas vaginalis [38, 39]. Mitosomes contain 2Fe-2S ferredoxin and are likely a place of metronidazole activation; however, the presence of metronidazole did not trigger any mitosome-related phenotype, even at lethal metronidazole concentrations (Fig. 2d).
Mitosomal heterogeneity supports the lack of fusion
The absence of observable mitosomal fusions suggested that the organelles could exhibit some degree of heterogeneity. In animal and fungal cells, experimental abolition of mitochondrial fusion leads to fragmentation of the mitochondrial network and functional and morphological heterogeneity of the individual mitochondrial compartments [40, 41].
Uniformity of mitosomes was inspected by immunolocalization of the endogenous mitosomal protein GL50803_9296  and the episomally encoded human influenza hemagglutinin (HA)-tagged mitosomal protein IscU. The fluorescence signals of both proteins co-localized to the same organelles in most instances but in every cell individual mitosomes were positive only for the endogenous protein (Fig. 1c). While the heterogeneity illustrates that the synthesis and/or the transport of the episomally expressed protein is not as efficient as that of the endogenous one, it also indicates that individual mitosomes did not fuse to homogenize their protein content.
Mitosomes divide during mitosis
The lack of observable mitosomal division during interphase suggested that mitosomes might divide during mitosis. Live-cell microscopy of mitotic G. intestinalis cells is hampered by the rapid movement of the detached dividing cells, in which the adhesive disc depolymerizes. Nevertheless, observation of individual cells passing through mitosis indicated that mitosomes may divide during this stage of the cell cycle (Additional files 1, 2, 3 and 4). Thus, fixed G. intestinalis cultures enriched for mitotic cells were instead examined by immunofluorescence microscopy. To enrich the mitotic cells, starvation  as well as albendazole-dependent  methods were used. While both methods provided the same results concerning mitosomal dynamics, the latter was used owing to a higher degree of synchrony.
Additional file 2: Movie of the dividing Giardia – IscU-Halo. (AVI 5339 kb)
Additional file 3: Movie of the dividing Giardia – DIC. (AVI 4615 kb)
Additional file 4: Movie of the dividing Giardia – merged channels. (AVI 11947 kb)
In contrast to interphase cells, mitotic cells were found to contain a variety of elongated dividing mitosomes whose morphology ranged from dumbbell-shaped to thread-like structures (Fig. 2a). Importantly, these mitosomes were found across the whole cytoplasm and were usually dumbbell-shaped, which is a typical configuration for dividing vesicular structures [44–46]. This observation suggests that the individual mitosomes undergo independent and synchronized divisions during mitosis.
To further follow the separation of the central mitosomes, the cells were co-labeled for centrin, a basal body marker . After their division the mitosomes remained associated with the basal bodies throughout the course of mitosis (Fig. 3b).
The prominent character of the central mitosomes was tested by the expression of a synthetic linker composed of the outer mitosomal membrane protein GiMOMP35 at the N-terminus , a central HA-tag, and the C-terminal SNARE protein GiQb4, which has been suggested to participate in membrane fusions on the cell periphery . The topology of the construct was designed to dislocate the mitosomes by linking them to the peripheral endomembrane vesicles (Fig. 3c). Indeed, the expression of the synthetic linker dramatically perturbed the overall distribution of the mitosomes. Of about 40 peripheral mitosomes, only several large structures remained. These structures were positive for the synthetic linker and very likely represented mitosomal aggregates induced upon the linker expression (Fig. 3c). However, the central mitosomes remained largely unaffected by the expression of the linker (Fig. 3c). This could be explained by the association of the central mitosomes with the karyomastigont (structural complex of the basal bodies and the nuclei), which minimized the effect of the linker expression. Moreover, the linker also induced rearrangement of the ER network as documented by co-labeling by the ER marker protein, protein disulfide isomerase 2 (PDI2) . Notably, the co-localization of the mitosome- and the ER-specific markers suggests that chimeric compartments may have been formed in these cells.
G. intestinalis undergoes DNA replication and nuclear division during the process of encystation, when tetranucleated 16 N cysts are formed . To follow mitosomal dynamics during encystation, G. intestinalis cells were induced to encyst in vitro, and the cells were then fixed and immunolabeled. Similarly to mitotic trophozoites, the encysting cells were found to contain elongated mitosomes that often adopted a dumbbell shape, suggesting that mitosomes divide during encystation (Fig. 2b). Later encystation stages with the characteristic oval shape of the cyst were devoid of dividing mitosomes. However, these cells contained approximately twice as many mitosomes as the trophozoites (Fig. 2c, d). Collectively, these data show that, in addition to two pairs of nuclei, G. intestinalis cysts contain a double set of mitosomes, which enable the parasite to undergo rapid cell division during excystation in a new host.
The single dynamin-related protein in G. intestinalis is not involved in mitosomal division
Mitochondrial division is mediated by dynamin-related proteins  or by the ancestral bacterial FtsZ-based machinery . Moreover, the actin cytoskeleton was recently found to participate in mitochondrial division, possibly by inducing initial mitochondrial constrictions . Thus, the roles of G. intestinalis dynamin-related protein (GlDRP)  and actin (GiActin)  in mitosomal division were investigated.
It has previously been shown that GiActin localizes to the axonemes and flagella, nuclei and the cortex of the trophozoites . An inspection of the mitotic cells showed no association between the dividing mitosomes and GiActin (Additional file 8).
The mitosomes associate with the endoplasmic reticulum
Dynamin-related proteins are not the only effectors of mitochondrial division. Recent data from mammalian and yeast cells have revealed the fundamental role of the ER–mitochondria connections in the dynamics of the mitochondrial network and the positioning of the mitochondrial division sites [8–10]. So far only limited data are available about whether such connections are present outside the supergroup of Opisthokonta, where animals and fungi belong. We tested if such associations also occur in G. intestinalis, which belongs to the Excavata .
The two organelles remained associated during mitosomal division (Fig. 5b). Moreover, the dividing mitosomes elongated along the ER tubules, which indicates that the ER may serve as a platform for mitosomal division (Fig. 5c, d).
The mitosome-associated endoplasmic reticulum is enriched for long-chain fatty acid CoA ligase 4
Several different molecular tethers mediate the association between the ER and the mitochondria. Fungi employ an ER–mitochondria tethering complex known as ERMES (ER–mitochondria encounter structure) consisting of four different components: Mdm10 and Mdm34 in the mitochondrial membrane, and the cytosolic Mdm12 and Mmm1 in the ER . Analogous interactions seem to be mediated by the recently described ER membrane protein complex (EMC)  and Lam6 protein [13, 14], whose unifying function is interorganellar lipid transport. Animal mitochondria were shown to rely on the interactions between mitofusin 2 anchored in both the ER membrane and the outer mitochondrial membrane . However, the function of this interaction has recently been questioned . Importantly, all these structures have limited evolutionary distributions and none of them is present in metamonads, including G. intestinalis [60, 61]. In addition, several proteins are enriched in the so-called mitochondria-associated membranes (MAMs), a specific region of the ER, which comes into contact with mitochondria and mainly accommodates lipid and fatty acid metabolic enzymes .
Mitosomes represent one of the most derived forms of mitochondria and are found in diverse anaerobic eukaryotes [25, 64]. During the course of mitochondrial evolution, the proteome of the mitosomes has shrunk to just a handful of proteins , whose sole role is the biosynthesis of iron–sulfur clusters [29, 33]. The mitosomes are devoid of the mitochondrial genome and cristae but have retained two organellar membranes. The stable number of mitosomes in G. intestinalis trophozoites indicates that their inheritance must be a controlled process, although alternate stochastic scenarios have also been suggested .
Mitochondrial dynamics, as studied in detail in fungal and animal cells, are controlled by dedicated molecular machineries governing both fusion and fission . However, information on the mitochondrial dynamics outside Opisthokonta is scarce.
One of the striking characters of mitosomal dynamics is the synchrony between mitosis and mitosomal division. In our experiments, we have shown that both the central and the peripheral mitosomes divide exclusively during mitosis.
Earlier reports showed that the central mitosomes localize near the basal bodies and the axonemes between the two nuclei . The division of this subpopulation of mitosomes occurs only in prophase and the daughter organelles then follow the separation of the chromosomes to the opposite spindle poles. The privileged localization of the central mitosome suggested that they may represent “germline” organelles, of which the peripheral organelles are derived upon mitosis [32, 65]. However, we show that the peripheral organelles also divide simultaneously during mitosis, including mitosis during encystation. This suggests that a mitosis-dependent signal for mitosomal division must exist in G. intestinalis.
Such overall harmonization of mitosomal division and mitosis has not been reported, to our knowledge, in any other eukaryote. In several instances a functional link between mitochondrial division and the cell cycle has been demonstrated, including for the mitochondria of kinetoplastids  and apicomplexans . However, these organisms carry just a single mitochondrion, which, in the case of kinetoplastids, is even physically connected to the basal body of the flagellum . Analogous behavior can be expected in other protists that carry a single mitochondrion, such as jakobids , where the organelle is often localized next to the cell nucleus.
What is the functional meaning of such synchronized division? We propose that the lack of mitosomal dynamics and the synchronized mitosomal division actually represent two sides of the same coin. The absence of dynamics in the interphase cell disqualifies the stochastic segregation of the organelles. Thus, harnessing the mitosomal and the nuclear division allows the cell to control the organelle number just before cytokinesis.
During the course of evolution, the FtsZ-based division machinery of the bacterial ancestor of mitochondrion has disappeared from most of the eukaryotes and has been replaced by the scission machinery driven by dynamin-related proteins. However, certain organisms from all supergroups of eukaryotes have preserved this ancestral division complex [19, 69], which suggests that the transition to the eukaryote-specific dynamin-based machinery occurred independently on numerous occasions. The group of Excavata to which G. intestinalis belongs comprises a great diversity of protists with a variety of mitochondrial forms, ranging from the single reticulate mitochondrion of kinetoplastids to the anaerobic vesicular forms known as hydrogenosomes and mitosomes of metamonads. So far, the division machinery has been characterized to some detail in mitochondria of Trypanosoma brucei [20, 21] and hydrogenosomes of Trichomonas vaginalis . Here, dynamin-related proteins have been shown to participate in organelle division. Similarly to Trypanosoma brucei, the G. intestinalis genome encodes only for a single dynamin-related protein (GlDRP). This protein has been shown to function during the encystation process . Indeed, we could show that its function is necessary for the completion of encystation, yet the presence of the dominant negative form of GlDRP did not affect the division of mitosomes, which is in contrast to the recent finding of Rout et al. . However, while our data suggest that dynamin-related proteins are not involved in mitosomal division, it is also possible that the level of the dominant negative form of dynamin capable of preventing encystation is not sufficient to interfere with mitosomal division. Considering that neither of the outer membrane DRP1 recruitment factors, such as Mff and Fis1 , is present in the G. intestinalis genome, the responsible mitosome division machinery remains entirely unknown. This also includes the absence of GiActin at the dividing organelles.
Instead, mitosomes maintain a vital connection to the ER throughout the cell cycle and the association becomes more prominent during mitosomal division. While the nature of the connection is unknown, we have shown that the ER–mitochondria interface is populated by the fatty acid activating enzyme LACS4. Thus, it is likely that the ER–mitosomal association enables lipid and/or fatty acid transport between the compartments as documented for the mitochondria of animals and fungi [12, 62]. Unfortunately, direct biochemical characterization of the mitosome-associated ER membrane fraction is not feasible owing to the lack of procedures enabling specific organelle purification . A recently developed technique involving in vivo biotinylation and cross-linking of the target protein  enables the bypassing of such experimental limitations, although optimization toward the native purification conditions will be required.
The bridging complexes between mitochondria and the ER include the ERMES and the EMC complexes [11, 59]. The ERMES complex was originally described in Saccharomyces cerevisiae as the first bona fide structure specialized in tethering the mitochondrial and ER membranes . The complete set of four ERMES components can be found across all supergroups of eukaryotes, although is missing in most Excavata species . The EMC is more conserved among eukaryotes, but it is missing in all metamonads including G. intestinalis and Trichomonas vaginalis . Considering that both the ERMES and the EMC were likely present in the last eukaryotic common ancestor (LECA), it is highly probable that they were lost in G. intestinalis and perhaps all metamonads.
Our data suggest that the overall dynamics of mitosomes in G. intestinalis is secondarily reduced down to organelle division. The mitosomes do not manifest any observable dynamics in the interphase cells, as their number and morphology remained constant upon metabolic stress induced by 5-nitroimidazole or under iron deficiency, which affects their single metabolic function of the iron–sulfur clusters formation. By contrast, highly enlarged hydrogenosomes appear in Trichomonas vaginalis treated with 5-nitroimidazole (metronidazole) and other drugs , and the organelles undergo distinct transformation upon the lack of iron ions .
Interestingly, mitosomal fusion was not observed in our experiments. While it is possible that the organelles fuse under very low frequency, the process is not efficient enough to provide a homogeneous population of mitosomes. Moreover, the G. intestinalis genome does not encode orthologs of the mitochondrial membrane fusion proteins identified in opisthokonts [6, 7]. It is, however, important to note that other lineages of eukaryotes, including Archaeplastida (e.g., Arabidopsis thaliana), which exhibit mitochondrial fusion, also do not rely on opisthokont machinery .
Nevertheless, the absence of mitochondrial fusion seems to be common to the whole supergroup of Excavata, as it has not been observed in any studied species so far. Neither have the orthologs of components governing the mitochondrial membrane(s) fusion been identified. Taken together, it is plausible that mitochondrial fusion appeared independently in other lineages of eukaryotes outside Excavata, perhaps employing different, lineage-specific molecular machinery. Whether the lack of mitochondrial fusion concerns also the LECA awaits further and more complex comparative analyses.
Although simple in their shape and function, the mitosomes of G. intestinalis show unique and sophisticated dynamics, which seem to be a mosaic of evolutionarily conserved traits and lineage-specific inventions. Nevertheless, an understanding of the molecular machinery responsible for mitosomal division and its synchrony as well as the nature of the ER–mitosome connections poses exciting possibilities for future research.
The mitochondria of animals and fungi undergo constant cycles of division and fusion during the cell cycle. Here, we show that the minimalist MROs known as mitosomes have dramatically simplified their dynamics. In the anaerobic protist G. intestinalis, mitosomes divide only during mitosis and remain steady during interphase. In contrast to mitochondria, we propose that mitosomes do not fuse but, similar to mitochondria, maintain a close connection to the ER. We propose that harnessing the nuclear and mitosomal division is a strategy evolved to bypass the lack of mitochondrial fusion.
G. intestinalis cultivation and transfection
G. intestinalis cells (strain WB) were cultured in TYI-S-33 medium supplemented with 10% heat-inactivated adult bovine serum (GE Healthcare, Chicago, IL, USA), 0.1% bovine bile (Sigma-Aldrich, St. Louis, MO, USA), and appropriate antibiotics at 37 °C. Cells were electroporated using a previously published modified protocol . Briefly, 300 μL of cell culture at an approximate concentration of 3.3 × 107 cells/mL was electroporated with 50 μg of a circular plasmid using a Bio-Rad Gene Pulser (BioRad, Hercules, CA, USA) with the exponential protocol (350 V, 1000 μF, 750 Ω). Transformants were maintained under selection with 57 μg/mL of puromycin (Gold Biotechnology, St. Louis, MO, USA) and/or 0.56 mg/mL G418 (Gold Biotechnology, St. Louis, MO, USA). For iron-starvation experiments, cells were incubated in TYI-S-33 medium without ferric ammonium citrate and supplemented with 2,2’-dipyridyl (Sigma-Aldrich, St. Louis, MO, USA) to a final concentration of 300 μM. The cell culture was maintained for several passages under these conditions.
Enrichment of mitotic cells
Two approaches for cell synchronization were tested: the starvation  and the albendazole-dependent  methods. Both methods provided the same results concerning the mitosomal dynamics. However, the albendazole treatment had a much greater effect on cell synchrony and therefore was used in the study. Trophozoites from the late log phase were incubated in growth medium supplemented with 100 ng/mL of albendazole (Sigma-Aldrich, St. Louis, MO, USA) for 6 h at 37 °C . After incubation, the albendazole-affected unattached cells were discarded and the unaffected adherent pre-mitotic cells were washed twice with pre-warmed, fresh, drug-free medium and then detached from the tube by cooling on ice for 10 min. The cells were then allowed to proliferate on slides in the drug-free conditions for 9–14 min, fixed, and permeabilized as described below.
G. intestinalis encystation
In vitro encystation was performed as previously described . Briefly, log-phase cells were incubated at 37 °C for 18 h in TYI:GS3 media at pH 7.8 that was supplemented with 5 mg/mL bovine bile (Sigma-Aldrich, St. Louis, MO, USA) and 0.546 mg/mL lactic acid (Sigma-Aldrich, St. Louis, MO, USA). After incubation, the medium was replaced with TYI-S-33 medium and the cells were incubated at 37 °C for several hours until they started to produce cysts. The cysts were then fixed with 1% paraformaldehyde for 30 min at room temperature and placed on slides.
For the immunofluorescence, trophozoites were incubated on slides in TYI-S-33 medium for 15 min at 37 °C, fixed in ice-cold methanol for 5 min, and permeabilized in ice-cold acetone for 5 min. The blocking and the immunolabeling steps were all performed in a humid chamber using a solution of 0.25% bovine serum albumin (BSA)(Sigma-Aldrich, St. Louis, MO, USA), 0.25% fish gelatin (Sigma-Aldrich, St. Louis, MO, USA), and 0.05% Tween 20 (Sigma-Aldrich, St. Louis, MO, USA) in phosphate-buffered saline (PBS) for 1 h each. The primary antibodies used in this work included rat anti-HA monoclonal IgG antibody (Roche, Basel, Switzerland, 1:1000 dilution), mouse anti-actin polyclonal antibody (gift from Alex Paredez, University of Washington, 1:250 dilution) , rabbit anti-GL50803_9296 polyclonal antibody (1:2000 dilution) , and mouse anti-GiPDI2 polyclonal antibody (a gift from Adrian Hehl, University of Zurich, 1:2000 dilution) . The secondary antibodies included Alexa Fluor 488-conjugated goat anti-rat monoclonal IgG antibody (Invitrogen, Eugene, OR, USA, batch number 1476598, cat. number A-21208, RRID: AB_141709; 1:1000 dilution), Alexa Fluor 647-conjugated goat anti-mouse monoclonal IgG antibody (Invitrogen, Eugene, OR, USA, batch number 1511346, cat. number A-21235, RRID: AB_141693; 1:1000 dilution), Alexa Fluor 594-conjugated goat anti-rabbit monoclonal IgG antibody (Invitrogen, Eugene, OR, USA, batch number 1454437, cat. number, A-21207, RRID: AB_141637; 1:1000 dilution), and Alexa Fluor 488-conjugated goat anti-mouse monoclonal IgG antibody (Invitrogen, Eugene, OR, USA, batch number 1562298, cat. number A-21202, RRID: AB_141607; 1:1000 dilution). Three 5-min washes in PBS were performed after each immunolabeling step. Slides were mounted in Vectashield (Vector Laboratories, Burlingame, CA, USA) containing DAPI.
The cysts were fixed in 1% paraformaldehyde for 30 min at 37 °C and spun down at 1000 × g for 5 min at room temperature. The cysts were then washed in 1× PEM buffer (100 mM PIPES pH 6.9, 1 mM EGTA, and 0.1 mM MgSO4), resuspended in 1× PEM buffer, and placed on cover slips. Cell permeabilization was performed using 0.2% Triton X-100 (Sigma-Aldrich, St. Louis, MO, USA) for 20 min. The cover slips were then washed three times with 1 mL of 1× PEM and incubated with anti-GL50803_9296 rabbit polyclonal antibody (1:2000 dilution) in 1× PEMBALG [100 mM PIPES pH 6.9, 1 mM EGTA, 0.1 mM MgSO4, 1% BSA, 0.1% NaN3, 100 mM lysine, and 0.5% cold-water fish skin gelatin (Sigma-Aldrich, St. Louis, MO, USA)] for 1 h. After three 5-min washes in 1× PEM, the slides were incubated with Alexa Fluor 594-conjugated goat anti-rabbit IgG antibody in 1× PEMBALG for 1 h. After three 5-min washes in 1× PEM, the slides were mounted in Vectashield containing DAPI.
For live-cell imaging experiments, trophozoites expressing an IscU-Halo tag fusion product  were incubated in growth medium supplemented with the TMR Halo ligand (Promega, Madison, WI, USA, 1:1000 dilution) for 1 h at 37 °C. To wash away unbound TMR ligand, the cells were washed twice with pre-warmed fresh medium and incubated for 30 min at 37 °C. After incubation, the cells were placed on ice for 10 min. The cells were then transferred to a microscope dish and observed using a confocal microscope.
Static images were acquired on an Olympus IX-81 microscope using a UPlanSApo 100×/1.4 numerical aperture (NA) oil-immersion objective. Z-stacks of images ranging between 0.23 and 0.25 μm were captured using an ORCA C4742-80-12AG monochromatic CCD camera (Hamamatsu, Shizuoka, Japan). Fluorescence was excited with a xenon arc burner-containing MT20 illumination system (Olympus, Tokyo, Japan), and emitted light was collected through a multiband emission filter. Imaging was controlled with the Olympus Cell-R software. Images were deconvolved using SVI Huygens software with the CMLE algorithm. Maximum intensity projections and brightness/contrast corrections were performed in FIJI ImageJ.
Structured illumination microscopy (SIM) imaging was also performed on a commercial 3D N-SIM microscope (inverted Nikon Eclipse Ti-E, Nikon, Tokyo, Japan) equipped with a Nikon CFI SR Apo TIRF objective (100× oil, NA 1.49). A structured illumination pattern projected into the sample plane was created on a diffraction grating block (100 EX V-R 3D-SIM) for laser wavelengths of 488, 561, and 647 nm. Excitation and emission light was separated using filter cubes with the appropriate filter sets SIM488 (excitation 470–490 nm, emission 500–545 nm), SIM561 (excitation 556–566 nm, emission 570–640 nm) and SIM647 (excitation 590–650 nm, emission 663–738 nm). Emission light was projected through a 2.5× relay lens onto the chip of an electron-multiplying charge-coupled device (EMCCD) camera (Andor iXon Ultra DU897, 10 MHz at 14-bit, 512 × 512 pixels). Three-color Z-stacks (Z-step: 120 nm) were acquired using NIS-Elements AR software (Laboratory Imaging). Laser intensity, electron-multiplying gain, and camera exposure time were set independently for each excitation wavelength. The intensity of the fluorescence signal was held within the linear range of the camera. Fifteen images (three rotations and five phase shifts) were recorded for every plane and color. SIM data were processed in NIS-Elements AR. Before sample measurement, the symmetry of the point spread function was checked with 100 nm red fluorescent beads (580/605, Carboxylate-Modified Microspheres, Molecular Probes, Eugene, OR, USA) mounted in Prolong Diamond Antiface Mountant (Molecular Probes, Eugene, OR, USA), and optimized by adjusting the objective correction collar. The live-imaging differential interference contrast (DIC) microscopy time series and confocal fluorescence images were acquired on an Olympus IX-81 microscope equipped with a Yokogawa CSU-X1 spinning disc unit and an Andor DU-897 EMCCD camera using an UPlanSApo 60×/1.35 NA oil-immersion objective (Olympus, Tokyo, Japan). Fluorescence was excited with a 561-nm laser (Coherent Inc., Santa Clara, CA, USA) and collected through a multiband emission filter (Semrock FF01-440/521/607/700). Typical Z-stacks were captured with a 0.5-μm Z-axis step. After imaging, images were processed in FIJI ImageJ software.
Plasmid construction and cloning
The G. intestinalis dynamin gene (GL50803_14373) and 250 base pairs of its 5′ untranslated region (UTR) were amplified together from G. intestinalis genomic DNA using the primers 5′-CATGGATATCACAACGAGGCTTTAAGCC-3′ and 5′-CATGATGCATGTCCTTCTTGGCAAGGTC-3′, which contain EcoRV and NsiI restriction sites, respectively. The resulting product was cloned as an EcoRV/NsiI fragment into an EcoRV/PstI-linearized pTG vector. The G. intestinalis centrin gene (GL50803_6744) and 300 bp of its 5′ UTR were amplified together from G. intestinalis genomic DNA using the primers 5′-CATGGATATCTGCCCATGGCTATGGTGT-3′ and 5′-CATGCTGCAGATAGAGGGACGTGCGGCG-3′, which contain EcoRV and PstI restriction sites, respectively. The resulting product was cloned as an EcoRV/PstI fragment into an EcoRV/PstI-linearized pTG vector.
To generate mutant K43E dynamin (GL50803_14373), the mutation was introduced by site-directed mutagenesis using the primers 5′-CATGACGCGTTATGTCTCAGATAGACAAG-3′ and 5′-CTCCAAAACCGATGACTCTCCCGCAGA-3′, and 5′-TCCCAATCTGCGGGAGAGTCATCGGTT-3′ and 5′-CATGGCGGCCGCTCCTTTCTTGGCAAGGTC-3′. The resulting product was cloned as an MluI/NotI fragment into a MluI/NotI-linearized pPAC vector.
The N-terminally HA-tagged gene for GiQb4 was amplified from G. intestinalis genomic DNA using primers 5′-CTAGGGATCCATGTACCCATACGATGTTCCAGATTACGCTGAAGAGATAGAATGTTCACTCA-3′ and 5′-GCTAGTCGACTCAATATCTGATCTCTGA-3′ containing BamHI/SalI restriction sites, respectively. Resulting product was cloned as a BamHI/SalI fragment to a BamHI/XhoI-linearized pONDRA plasmid containing the gene for GiMOMP35 .
G. intestinalis cells were collected in ST buffer containing protease inhibitors TLCK and Leupeptine. The cells were sonicated by 1-s pulses at amplitude 40 until all the cells were completely lysed. The lysate was centrifuged at 2.680 × g for 20 min at 4 °C. The supernatant was centrifuged at 180.000 × g for 30 min at 4 °C. The resulting supernatant was considered as the cytosolic fraction while the pellet were considered as the high-speed pellet (HSP) fraction.
Sodium carbonate extraction
For sodium carbonate extraction, 50 μL of the cellular HSP fraction was mixed with 200 μL of freshly made 100 mM Na2CO3 (pH 11) and incubated on ice for 30 min. The sample was mixed vigorously every 2 min. After incubation, the sample was centrifuged at 100,000 × g for 30 min at 4 °C. The supernatant was then mixed with TCA (trichloracetic acid) to a final concentration of 20% and incubated on ice for 30 min. The pellet (1) was kept on ice. After incubation with TCA, the supernatant was centrifuged at 30,000 × g for 10 min at 4 °C. The pellet (2) was rinsed with 0.5 mL of ice-cold acetone and centrifuged at 30,000 × g for 10 min at 4 °C. Both pellets were mixed with 50 μL of 1 × SDS (sodium dodecyl sulfate) sample buffer and incubated at 95 °C until dissolved.
For treatment with trypsin, 20 μL of the cellular HSP fraction containing 150 μg of proteins was mixed with trypsin (5 mg/mL) or trypsin and 1% Triton X-100 as follows: (1) 20 μL HSP + 30 μL SM (sucrose, MOPS) buffer; (2) 20 μL HSP + 28 μL SM buffer + 2 μL trypsin; and (3) 20 μL HSP + 23 μL SM buffer + 5 μL Triton X-100.
All samples were incubated for 10 min at 37 °C and boiled in 50 μL of 1 × SDS sample buffer at 95 °C for 5 min.
Determination of enzymatic activities
All enzyme activities were assayed spectrophotometrically at 25 °C. The activity of PFO was assayed as the rate of methyl viologen reduction monitored at 600 nm. The assay was performed under anaerobic conditions using pyruvate as a substrate for PFO as described in .
We would like to thank Jeremy G. Wideman for helpful comments and suggestions to the manuscript, and Ivan Hrdy for his help with the biochemical characterization of G. intestinalis maintained in iron-deficient conditions.
This project was funded by a grant from the Czech Science Foundation GA13-29423S awarded to PD, by a grant from the Charles University Grant Agency (579012) awarded to LV, and by the PRIMUS/SCI/34 grant from the Charles University awarded to PD. This work was further supported by the Ministry of Education, Youth and Sports of CR within the National Sustainability Program II (Project BIOCEV-FAR) LQ1604 and by the project BIOCEV (CZ.1.05/1.1.00/02.0109). We acknowledge the Imaging Methods Core Facility at BIOCEV, supported by the Czech-BioImaging large RI project (LM2015062 funded by the Ministry of Education, Youth and Sports, CR), for their support with obtaining scientific data presented in this paper.
Availability of data and materials
All data generated or analyzed during this study are included in this published article and its Additional files.
LV, PD, SGS, and JT designed the experiments; LV, PD, VN, PT, ZŠ, AA, EE, and PT performed the experiments; LV, PD, GMH, and ZŠ analyzed the data; LV and PD wrote the manuscript. All authors read and approved the final manuscript.
The authors declare that they have no competing interests.
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