Table 3 Characteristics of contigs assembled with length exceeding 10 kb
From: Transcriptome, proteome and draft genome of Euglena gracilis
Contigs | Total contigs analysed > 10 kb | 1459 |
Total nucs in contigs analysed | 22 Mb | |
Contigs with CDS | 53 | |
Percent contigs with CDS | 3.6 | |
CDS | Number analysed | 135 |
Average length | 3790 | |
Total length | 481,369 | |
Exons | Number of exons analysed | 421 |
Average Length | 174.54 | |
Median Length | 112 | |
Total Length | 73,482 | |
Average per predicted CDS | 3.85 | |
Introns | Total introns analysed | 271 |
Average length | 1027.14 | |
Median length | 598 | |
Total length | 278,354 | |
Introns per predicted CDS | 2.01 | |
Number/percent conventional | 218/80.1 | |
Number/percent intermediate | 30/11.1 | |
Number/percent non-conventional | 23/8.5 | |
Percent nucleotides in CDS (exon) | 0 |