Jin L, Seielstad M, Xiao C. Genetic, Linguistic and Archaeological Perspectives on Human Diversity in Southeast Asia. Kunming: World Scientific; 2001.
Yang Z, Dong Y, Gao L, Cheng B, Yang J, Zeng W, et al. The distribution of Y chromosome haplogroups in the nationalities from Yunnan Province of China. Ann Hum Biol. 2005;32(1):80–7.
Article
PubMed
Google Scholar
Hellenthal G, Busby GBJ, Band G, Wilson JF, Capelli C, Falush D, et al. A genetic atlas of human admixture history. Science. 2014;343(6172):747–51.
Article
CAS
PubMed
PubMed Central
Google Scholar
Pan Z, Xu S. Population genomics of East Asian ethnic groups. Hereditas. 2020;157(1):49.
Article
PubMed
PubMed Central
Google Scholar
Yao A. Recent Developments in the Archaeology of Southwestern China. J Archaeol Res. 2010;18:203–39.
Article
Google Scholar
Allard F. Stirrings at the Periphery: History, Archaeology, and the Study of Dian. Int J Hist Archaeol. 1998;2:321–41.
Article
Google Scholar
Wang Z. History of nationalities in China. Beijing: China Social Science Press; 1994.
Cang M. Study on the migration culture of the ethnic groups in Yunnan. Kunming: Yunnan Nationality Press; 1997.
Yao YG, Nie L, Harpending H, Fu YX, Yuan ZG, Zhang YP. Genetic relationship of Chinese ethnic populations revealed by mtDNA sequence diversity. Am J Phys Anthropol. 2002;118(1):63–76.
Article
PubMed
Google Scholar
Jin L, Su B. Natives or immigrants: modern human origin in east Asia. Nat Rev Genet. 2000;1(2):126–33.
Article
CAS
PubMed
Google Scholar
Qi X, Cui C, Peng Y, Zhang X, Yang Z, Zhong H, et al. Genetic evidence of paleolithic colonization and neolithic expansion of modern humans on the tibetan plateau. Mol Biol Evol. 2013;30(8):1761–78.
Article
CAS
PubMed
Google Scholar
Wang CC, Wang LX, Shrestha R, Zhang M, Huang XY, Hu K, et al. Genetic structure of Qiangic populations residing in the western Sichuan corridor. PLoS ONE. 2014;9(8):e103772.
Article
PubMed
PubMed Central
CAS
Google Scholar
Wang LX, Lu Y, Zhang C, Wei LH, Yan S, Huang YZ, et al. Reconstruction of Y-chromosome phylogeny reveals two neolithic expansions of Tibeto-Burman populations. Mol Genet Genomics. 2018;293(5):1293–300.
Article
CAS
PubMed
Google Scholar
Yao HB, Tang S, Yao X, Yeh HY, Zhang W, Xie Z, et al. The genetic admixture in Tibetan-Yi Corridor. Am J Phys Anthropol. 2017;164(3):522–32.
Article
PubMed
Google Scholar
Wang Z, He G, Luo T, Zhao X, Liu J, Wang M, et al. Massively parallel sequencing of 165 ancestry informative SNPs in two Chinese Tibetan-Burmese minority ethnicities. Forensic Sci Int Genet. 2018;34:141–7.
Article
PubMed
CAS
Google Scholar
Wen B, Xie X, Gao S, Li H, Shi H, Song X, et al. Analyses of genetic structure of Tibeto-Burman populations reveals sex-biased admixture in southern Tibeto-Burmans. Am J Hum Genet. 2004;74(5):856–65.
Article
CAS
PubMed
PubMed Central
Google Scholar
Xu B, Guo J, Huang Y, Chen X, Deng X, Wang CC. The paternal genetic structure of Jingpo and Dai in southwest China. Ann Hum Biol. 2019;46(3):279–83.
Article
PubMed
Google Scholar
Kiezun A, Garimella K, Do R, Stitziel NO, Neale BM, McLaren PJ, et al. Exome sequencing and the genetic basis of complex traits. Nat Genet. 2012;44(6):623–30.
Article
CAS
PubMed
PubMed Central
Google Scholar
Lee S, Emond MJ, Bamshad MJ, Barnes KC, Rieder MJ, Nickerson DA, et al. Optimal unified approach for rare-variant association testing with application to small-sample case-control whole-exome sequencing studies. Am J Hum Genet. 2012;91(2):224–37.
Article
CAS
PubMed
PubMed Central
Google Scholar
Flannick J, Mercader JM, Fuchsberger C, Udler MS, Mahajan A, Wessel J, et al. Exome sequencing of 20,791 cases of type 2 diabetes and 24,440 controls. Nature. 2019;570(7759):71–6.
Article
CAS
PubMed
PubMed Central
Google Scholar
Liu DJ, Peloso GM, Yu H, Butterworth AS, Wang X, Mahajan A, et al. Exome-wide association study of plasma lipids in >300,000 individuals. Nat Genet. 2017;49(12):1758–66.
Article
CAS
PubMed
PubMed Central
Google Scholar
Locke AE, Steinberg KM, Chiang CWK, Service SK, Havulinna AS, Stell L, et al. Exome sequencing of Finnish isolates enhances rare-variant association power. Nature. 2019;572(7769):323–8.
Article
CAS
PubMed
PubMed Central
Google Scholar
Tang CS, Zhang H, Cheung CY, Xu M, Ho JC, Zhou W, et al. Exome-wide association analysis reveals novel coding sequence variants associated with lipid traits in Chinese. Nat Commun. 2015;6:10206.
Article
CAS
PubMed
Google Scholar
Lettre G, Hirschhorn JN. Small island, big genetic discoveries. Nat Genet. 2015;47(11):1224–5.
Article
CAS
PubMed
Google Scholar
Avila-Arcos MC, McManus KF, Sandoval K, Rodriguez-Rodriguez JE, Villa-Islas V, Martin AR, et al. Population History and Gene Divergence in Native Mexicans Inferred from 76 Human Exomes. Mol Biol Evol. 2020;37(4):994–1006.
Article
CAS
PubMed
Google Scholar
Kristiansson K, Naukkarinen J, Peltonen L. Isolated populations and complex disease gene identification. Genome Biol. 2008;9(8):109.
Article
PubMed
PubMed Central
CAS
Google Scholar
Olson J. An Ethnohistorical Dictionary of China. Westport: Greenwood Publishing Group; 1998.
Cann HM, de Toma C, Cazes L, Legrand MF, Morel V, Piouffre L, et al. A human genome diversity cell line panel. Science. 2002;296(5566):261–2.
Article
CAS
PubMed
Google Scholar
Bergstrom A, McCarthy SA, Hui R, Almarri MA, Ayub Q, Danecek P, et al. Insights into human genetic variation and population history from 929 diverse genomes. Science. 2020;367(6484):eaay5012.
Article
CAS
PubMed
PubMed Central
Google Scholar
Genomes Project Consortium. A global reference for human genetic variation. Nature. 2015;526(7571):68–74.
Article
CAS
Google Scholar
Alexander DH, Novembre J, Lange K. Fast model-based estimation of ancestry in unrelated individuals. Genome Res. 2009;19(9):1655–64.
Article
CAS
PubMed
PubMed Central
Google Scholar
Gutenkunst RN, Hernandez RD, Williamson SH, Bustamante CD. Inferring the joint demographic history of multiple populations from multidimensional SNP frequency data. PLoS Genet. 2009;5(10):e1000695.
Article
PubMed
PubMed Central
CAS
Google Scholar
Pickrell JK, Pritchard JK. Inference of population splits and mixtures from genome-wide allele frequency data. PLoS Genet. 2012;8(11):e1002967.
Article
CAS
PubMed
PubMed Central
Google Scholar
Browning SR, Browning BL. Accurate Non-parametric Estimation of Recent Effective Population Size from Segments of Identity by Descent. Am J Hum Genet. 2015;97(3):404–18.
Article
CAS
PubMed
PubMed Central
Google Scholar
McEvoy BP, Powell JE, Goddard ME, Visscher PM. Human population dispersal “Out of Africa” estimated from linkage disequilibrium and allele frequencies of SNPs. Genome Res. 2011;21(6):821–9.
Article
CAS
PubMed
PubMed Central
Google Scholar
Wang Y, Lu D, Chung YJ, Xu S. Genetic structure, divergence and admixture of Han Chinese Japanese and Korean populations. Hereditas. 2018;155:19.
Article
PubMed
PubMed Central
Google Scholar
Sherry ST, Ward MH, Kholodov M, Baker J, Phan L, Smigielski EM, et al. dbSNP: the NCBI database of genetic variation. Nucleic Acids Res. 2001;29(1):308–11.
Article
CAS
PubMed
PubMed Central
Google Scholar
Lek M, Karczewski KJ, Minikel EV, Samocha KE, Banks E, Fennell T, et al. Analysis of protein-coding genetic variation in 60,706 humans. Nature. 2016;536(7616):285–91.
Article
CAS
PubMed
PubMed Central
Google Scholar
McLaren W, Gil L, Hunt SE, Riat HS, Ritchie GR, Thormann A, et al. The Ensembl Variant Effect Predictor. Genome Biol. 2016;17(1):122.
Article
PubMed
PubMed Central
CAS
Google Scholar
Kumar P, Henikoff S, Ng PC. Predicting the effects of coding non-synonymous variants on protein function using the SIFT algorithm. Nat Protoc. 2009;4(7):1073–81.
Article
CAS
PubMed
Google Scholar
Adzhubei IA, Schmidt S, Peshkin L, Ramensky VE, Gerasimova A, Bork P, et al. A method and server for predicting damaging missense mutations. Nat Methods. 2010;7(4):248–9.
Article
CAS
PubMed
PubMed Central
Google Scholar
Yi X, Liang Y, Huerta-Sanchez E, Jin X, Cuo ZX, Pool JE, et al. Sequencing of 50 human exomes reveals adaptation to high altitude. Science. 2010;329(5987):75–8.
Article
CAS
PubMed
PubMed Central
Google Scholar
Bronneke S, Bruckner B, Sohle J, Siegner R, Smuda C, Stab F, et al. Genome-wide expression analysis of wounded skin reveals novel genes involved in angiogenesis. Angiogenesis. 2015;18(3):361–71.
Article
PubMed
CAS
Google Scholar
Roudnitzky N, Bufe B, Thalmann S, Kuhn C, Gunn HC, Xing C, et al. Genomic, genetic and functional dissection of bitter taste responses to artificial sweeteners. Hum Mol Genet. 2011;20(17):3437–49.
Article
CAS
PubMed
Google Scholar
Roura E, Aldayyani A, Thavaraj P, Prakash S, Greenway D, Thomas WG, et al. Variability in Human Bitter Taste Sensitivity to Chemically Diverse Compounds Can Be Accounted for by Differential TAS2R Activation. Chem Senses. 2015;40(6):427–35.
Article
CAS
PubMed
Google Scholar
Zhong W, Zhao Y, Tang Y, Wei X, Shi X, Sun W, et al. Chronic alcohol exposure stimulates adipose tissue lipolysis in mice: role of reverse triglyceride transport in the pathogenesis of alcoholic steatosis. Am J Pathol. 2012;180(3):998–1007.
Article
CAS
PubMed
PubMed Central
Google Scholar
Jun DW, Han JH, Jang EC, Kim SH, Kim SH, Jo YJ, et al. Polymorphisms of microsomal triglyceride transfer protein gene and phosphatidylethanolamine N-methyltransferase gene in alcoholic and nonalcoholic fatty liver disease in Koreans. Eur J Gastroenterol Hepatol. 2009;21(6):667–72.
Article
CAS
PubMed
Google Scholar
GTEx Consortium. The Genotype-Tissue Expression (GTEx) project. Nat Genet. 2013;45(6):580–5.
Article
CAS
Google Scholar
Mohammed AA, Vernon HJ, Ferguson M, Kline AD. PARS2-associated mitochondrial disease: A case report of a patient with prolonged survival and literature review. Mol Genet Metab Rep. 2020;24:100613.
Article
CAS
Google Scholar
Zhou Y, Zhou B, Pache L, Chang M, Khodabakhshi AH, Tanaseichuk O, et al. Metascape provides a biologist-oriented resource for the analysis of systems-level datasets. Nat Commun. 2019;10(1):1523.
Article
PubMed
PubMed Central
CAS
Google Scholar
Su B, Xiao C, Deka R, Seielstad MT, Kangwanpong D, Xiao J, et al. Y chromosome haplotypes reveal prehistorical migrations to the Himalayas. Hum Genet. 2000;107(6):582–90.
Article
CAS
PubMed
Google Scholar
Rose L. Nepal: Strategy for Survival. Oakland: Univ of California Press; 1971.
Li X, Zhao X, Xing J, Li J, He F, Hou R, et al. Different epigenome regulation and transcriptome expression of CD4(+) and CD8(+) T cells from monozygotic twins discordant for psoriasis. Australas J Dermatol. 2020;61(4):e388–94.
Article
PubMed
Google Scholar
Meyer D, Single RM, Mack SJ, Erlich HA, Thomson G. Signatures of demographic history and natural selection in the human major histocompatibility complex Loci. Genetics. 2006;173(4):2121–42.
Article
CAS
PubMed
PubMed Central
Google Scholar
Sabeti PC, Varilly P, Fry B, Lohmueller J, Hostetter E, Cotsapas C, et al. Genome-wide detection and characterization of positive selection in human populations. Nature. 2007;449(7164):913–8.
Article
CAS
PubMed
PubMed Central
Google Scholar
Gkika D, Lemonnier L, Shapovalov G, Gordienko D, Poux C, Bernardini M, et al. TRP channel-associated factors are a novel protein family that regulates TRPM8 trafficking and activity. J Cell Biol. 2015;208(1):89–107.
Article
CAS
PubMed
PubMed Central
Google Scholar
Saeki K, Onishi H, Koga S, Ichimiya S, Nakayama K, Oyama Y, et al. FAM115C could be a novel tumor suppressor associated with prolonged survival in pancreatic cancer patients. J Cancer. 2020;11(8):2289–302.
Article
CAS
PubMed
PubMed Central
Google Scholar
Wang SS, Gonzalez P, Yu K, Porras C, Li Q, Safaeian M, et al. Common genetic variants and risk for HPV persistence and progression to cervical cancer. PLoS ONE. 2010;5(1):e8667.
Article
PubMed
PubMed Central
CAS
Google Scholar
Eirin A, Lerman A, Lerman LO. Mitochondria: a pathogenic paradigm in hypertensive renal disease. Hypertension. 2015;65(2):264–70.
Article
CAS
PubMed
Google Scholar
Yang S, Liu S, Wang Y, Wan H, Zhao D, Li Y, et al. High blood pressure in Chinese ethnic minorities: report from rural Yunnan province. Am J Hypertens. 2011;24(11):1209–14.
Article
PubMed
Google Scholar
Yang D, Xu C, Wang J, Zhao Y. Spatiotemporal epidemic characteristics and risk factor analysis of malaria in Yunnan Province, China. BMC Public Health. 2017;17(1):66.
Article
PubMed
PubMed Central
Google Scholar
Kim UK, Jorgenson E, Coon H, Leppert M, Risch N, Drayna D. Positional cloning of the human quantitative trait locus underlying taste sensitivity to phenylthiocarbamide. Science. 2003;299(5610):1221–5.
Article
CAS
PubMed
Google Scholar
Roudnitzky N, Behrens M, Engel A, Kohl S, Thalmann S, Hubner S, et al. Receptor Polymorphism and Genomic Structure Interact to Shape Bitter Taste Perception. PLoS Genet. 2015;11(9):e1005530.
Article
PubMed
PubMed Central
CAS
Google Scholar
Li XH, Zhou HN, Xu JW, Lin ZR, Sun XD, Li JY, et al. Seven decades towards malaria elimination in Yunnan, China. Malar J. 2021;20(1):147.
Article
CAS
PubMed
PubMed Central
Google Scholar
Xu J, Liu H. The challenges of malaria elimination in Yunnan Province, People’s Republic of China. Southeast Asian J Trop Med Public Health. 2012;43(4):819–24.
PubMed
Google Scholar
Ayi K, Turrini F, Piga A, Arese P. Enhanced phagocytosis of ring-parasitized mutant erythrocytes: a common mechanism that may explain protection against falciparum malaria in sickle trait and beta-thalassemia trait. Blood. 2004;104(10):3364–71.
Article
CAS
PubMed
Google Scholar
Allen SJ, O’Donnell A, Alexander ND, Alpers MP, Peto TE, Clegg JB, et al. alpha+-Thalassemia protects children against disease caused by other infections as well as malaria. Proc Natl Acad Sci U S A. 1997;94(26):14736–41.
Article
CAS
PubMed
PubMed Central
Google Scholar
Modiano G, Morpurgo G, Terrenato L, Novelletto A, Di Rienzo A, Colombo B, et al. Protection against malaria morbidity: near-fixation of the alpha-thalassemia gene in a Nepalese population. Am J Hum Genet. 1991;48(2):390–7.
CAS
PubMed
PubMed Central
Google Scholar
He J, Song W, Yang J, Lu S, Yuan Y, Guo J, et al. Next-generation sequencing improves thalassemia carrier screening among premarital adults in a high prevalence population: the Dai nationality. China Genet Med. 2017;19(9):1022–31.
Article
CAS
PubMed
Google Scholar
Zhang J, He J, Zeng XH, Ge SJ, Huang Y, Su J, et al. Genetic heterogeneity of the beta-globin gene in various geographic populations of Yunnan in southwestern China. PLoS ONE. 2015;10(4):e0122956.
Article
PubMed
PubMed Central
CAS
Google Scholar
Ruwende C, Khoo SC, Snow RW, Yates SN, Kwiatkowski D, Gupta S, et al. Natural selection of hemi- and heterozygotes for G6PD deficiency in Africa by resistance to severe malaria. Nature. 1995;376(6537):246–9.
Article
CAS
PubMed
Google Scholar
Guindo A, Fairhurst RM, Doumbo OK, Wellems TE, Diallo DA. X-linked G6PD deficiency protects hemizygous males but not heterozygous females against severe malaria. PLoS Med. 2007;4(3):e66.
Article
PubMed
PubMed Central
CAS
Google Scholar
Howes RE, Piel FB, Patil AP, Nyangiri OA, Gething PW, Dewi M, et al. G6PD deficiency prevalence and estimates of affected populations in malaria endemic countries: a geostatistical model-based map. PLoS Med. 2012;9(11):e1001339.
Article
CAS
PubMed
PubMed Central
Google Scholar
Stanton RC. Glucose-6-phosphate dehydrogenase, NADPH, and cell survival. IUBMB Life. 2012;64(5):362–9.
Article
CAS
PubMed
PubMed Central
Google Scholar
Mason PJ, Bautista JM, Gilsanz F. G6PD deficiency: the genotype-phenotype association. Blood Rev. 2007;21(5):267–83.
Article
CAS
PubMed
Google Scholar
Yoshida A. Hemolytic anemia and G6PD deficiency. Science. 1973;179(4073):532–7.
Article
CAS
PubMed
Google Scholar
Yang Y, Zhu Y, Li D, Li Z, Lu H, Wu J, et al. Characterization of glucose-6-phosphate dehydrogenase deficiency and identification of a novel haplotype 487G>A/IVS5-612(G>C) in the Achang population of Southwestern China. Sci China C Life Sci. 2007;50(4):479–85.
Article
CAS
PubMed
Google Scholar
Liu H, Huang K, Liu S, Sun H, Lin K, Huang X, et al. Gene frequency and haplotype distribution of hemoglobin E among seven minority groups of Yunnan. China Am J Hum Biol. 2016;28(6):927–31.
Article
PubMed
Google Scholar
Clarke TK, Adams MJ, Davies G, Howard DM, Hall LS, Padmanabhan S, et al. Genome-wide association study of alcohol consumption and genetic overlap with other health-related traits in UK Biobank (N=112 117). Mol Psychiatry. 2017;22(10):1376–84.
Article
CAS
PubMed
PubMed Central
Google Scholar
Qian W, Deng L, Lu D, Xu S. Genome-wide landscapes of human local adaptation in Asia. PLoS ONE. 2013;8(1):e54224.
Article
CAS
PubMed
PubMed Central
Google Scholar
Clark AG, Hubisz MJ, Bustamante CD, Williamson SH, Nielsen R. Ascertainment bias in studies of human genome-wide polymorphism. Genome Res. 2005;15(11):1496–502.
Article
CAS
PubMed
PubMed Central
Google Scholar
Tennessen JA, O’Connor TD, Bamshad MJ, Akey JM. The promise and limitations of population exomics for human evolution studies. Genome Biol. 2011;12(9):127.
Article
CAS
PubMed
PubMed Central
Google Scholar
Schiffels S, Durbin R. Inferring human population size and separation history from multiple genome sequences. Nat Genet. 2014;46(8):919–25.
Article
CAS
PubMed
PubMed Central
Google Scholar
Naidoo T, Sjodin P, Schlebusch C, Jakobsson M. Patterns of variation in cis-regulatory regions: examining evidence of purifying selection. BMC Genomics. 2018;19(1):95.
Article
PubMed
PubMed Central
CAS
Google Scholar
Bolger AM, Lohse M, Usadel B. Trimmomatic: a flexible trimmer for Illumina sequence data. Bioinformatics. 2014;30(15):2114–20.
Article
CAS
PubMed
PubMed Central
Google Scholar
Li H, Durbin R. Fast and accurate long-read alignment with Burrows-Wheeler transform. Bioinformatics. 2010;26(5):589–95.
Article
PubMed
PubMed Central
CAS
Google Scholar
McKenna A, Hanna M, Banks E, Sivachenko A, Cibulskis K, Kernytsky A, et al. The Genome Analysis Toolkit: a MapReduce framework for analyzing next-generation DNA sequencing data. Genome Res. 2010;20(9):1297–303.
Article
CAS
PubMed
PubMed Central
Google Scholar
Hao M, Pu W, Li Y, Wen S, Sun C, Ma Y, et al. The HuaBiao project: whole-exome sequencing of 5000 Han Chinese individuals. J Genet Genomics. 2021;48(11):1032–5.
Article
PubMed
Google Scholar
Hao M, Pu W, Li Y, Wen S, Sun C, Ma Y, et al. Huabiao whole exome sequencing: The National Omics Data Encyclopedia; 2019. https://www.biosino.org/node. OEP000710. Accessed Apr 2022.
Lu D, Lou H, Yuan K, Wang X, Wang Y, Zhang C, et al. Ancestral Origins and Genetic History of Tibetan Highlanders. Am J Hum Genet. 2016;99(3):580–94.
Article
CAS
PubMed
PubMed Central
Google Scholar
Lu D, Lou H, Yuan K, Wang X, Wang Y, Zhang C, et al. NGS data for TIB project: National Genomics Data Center; 2016. https://ngdc.cncb.ac.cn. PRJCA000246. Accessed Apr 2022.
Bergstrom A, McCarthy SA, Hui R, Almarri MA, Ayub Q, Danecek P, et al. Human Genome Diversity Project: International Genome Sample Resource; 2020. https://www.internationalgenome.org. Accessed Apr 2022.
Morseburg A, Pagani L, Ricaut FX, Yngvadottir B, Harney E, Castillo C, et al. Multi-layered population structure in Island Southeast Asians. Eur J Hum Genet. 2016;24(11):1605–11.
Article
PubMed
PubMed Central
Google Scholar
Morseburg A, Pagani L, Ricaut FX, Yngvadottir B, Harney E, Castillo C, et al. Multi-layered population structure in Island Southeast Asians: Gene Expression Omnibus; 2016. https://www.ncbi.nlm.nih.gov/geo. GSE77508. Accessed Apr 2022.
Manichaikul A, Mychaleckyj JC, Rich SS, Daly K, Sale M, Chen WM. Robust relationship inference in genome-wide association studies. Bioinformatics. 2010;26(22):2867–73.
Article
CAS
PubMed
PubMed Central
Google Scholar
Zheng X, Levine D, Shen J, Gogarten SM, Laurie C, Weir BS. A high-performance computing toolset for relatedness and principal component analysis of SNP data. Bioinformatics. 2012;28(24):3326–8.
Article
CAS
PubMed
PubMed Central
Google Scholar
Li H. A statistical framework for SNP calling, mutation discovery, association mapping and population genetical parameter estimation from sequencing data. Bioinformatics. 2011;27(21):2987–93.
Article
CAS
PubMed
PubMed Central
Google Scholar
Purcell S, Neale B, Todd-Brown K, Thomas L, Ferreira MA, Bender D, et al. PLINK: a tool set for whole-genome association and population-based linkage analyses. Am J Hum Genet. 2007;81(3):559–75.
Article
CAS
PubMed
PubMed Central
Google Scholar
Weir BS, Cockerham CC. Estimating F-Statistics for the Analysis of Population Structure. Evolution. 1984;38(6):1358–70.
CAS
PubMed
Google Scholar
Reich D, Thangaraj K, Patterson N, Price AL, Singh L. Reconstructing Indian population history. Nature. 2009;461(7263):489–94.
Article
CAS
PubMed
PubMed Central
Google Scholar
Patterson N, Moorjani P, Luo Y, Mallick S, Rohland N, Zhan Y, et al. Ancient admixture in human history. Genetics. 2012;192(3):1065–93.
Article
PubMed
PubMed Central
Google Scholar
Narasimhan V, Danecek P, Scally A, Xue Y, Tyler-Smith C, Durbin R. BCFtools/RoH: a hidden Markov model approach for detecting autozygosity from next-generation sequencing data. Bioinformatics. 2016;32(11):1749–51.
Article
CAS
PubMed
PubMed Central
Google Scholar
Browning BL, Zhou Y, Browning SR. A One-Penny Imputed Genome from Next-Generation Reference Panels. Am J Hum Genet. 2018;103(3):338–48.
Article
CAS
PubMed
PubMed Central
Google Scholar
Zhou Y, Browning SR, Browning BL. A Fast and Simple Method for Detecting Identity-by-Descent Segments in Large-Scale Data. Am J Hum Genet. 2020;106(4):426–37.
Article
CAS
PubMed
PubMed Central
Google Scholar
1000 Genomes Project Consortium. 1000 Genomes Project: International Genome Sample Resource; 2015. https://www.internationalgenome.org. Accessed Apr 2022.
Sukumaran J, Holder MT. DendroPy: a Python library for phylogenetic computing. Bioinformatics. 2010;26(12):1569–71.
Article
CAS
PubMed
Google Scholar
International HapMap Consortium. A second generation human haplotype map of over 3.1 million SNPs. Nature. 2007;449(7164):851–61.
Article
CAS
Google Scholar
Ewing G, Hermisson J. MSMS: a coalescent simulation program including recombination, demographic structure and selection at a single locus. Bioinformatics. 2010;26(16):2064–5.
Article
CAS
PubMed
PubMed Central
Google Scholar
Szpiech ZA, Hernandez RD. selscan: an efficient multithreaded program to perform EHH-based scans for positive selection. Mol Biol Evol. 2014;31(10):2824–7.
Article
CAS
PubMed
PubMed Central
Google Scholar