Evans MJ, Kaufman MH: Establishment in culture of pluripotential cells from mouse embryos. Nature. 1981, 292: 154-156. 10.1038/292154a0.
Article
CAS
PubMed
Google Scholar
Martin GR: Isolation of a pluripotent cell line from early mouse embryos cultured in medium conditioned by teratocarcinoma stem cells. Proc Natl Acad Sci USA. 1981, 78: 7634-7638. 10.1073/pnas.78.12.7634.
Article
PubMed Central
CAS
PubMed
Google Scholar
Boyer LA, Lee TI, Cole MF, Johnstone SE, Levine SS, Zucker JP, Guenther MG, Kumar RM, Murray HL, Jenner RG, Gifford DK, Melton DA, Jaenisch R, Young RA: Core transcriptional regulatory circuitry in human embryonic stem cells. Cell. 2005, 122: 947-956. 10.1016/j.cell.2005.08.020.
Article
PubMed Central
CAS
PubMed
Google Scholar
Loh YH, Wu Q, Chew JL, Vega VB, Zhang W, Chen X, Bourque G, George J, Leong B, Liu J, Wong KY, Sung KW, Lee CW, Zhao XD, Chiu KP, Lipovich L, Kuznetsov VA, Robson P, Stanton LW, Wei CL, Ruan Y, Lim B, Ng HH: The Oct4 and Nanog transcription network regulates pluripotency in mouse embryonic stem cells. Nat Genet. 2006, 38: 431-440. 10.1038/ng1760.
Article
CAS
PubMed
Google Scholar
Cartwright P, McLean C, Sheppard A, Rivett D, Jones K, Dalton S: LIF/STAT3 controls ES cell self-renewal and pluripotency by a Myc-dependent mechanism. Development. 2005, 132: 885-896. 10.1242/dev.01670.
Article
CAS
PubMed
Google Scholar
Nishimoto M, Miyagi S, Yamagishi T, Sakaguchi T, Niwa H, Muramatsu M, Okuda A: Oct-3/4 maintains the proliferative embryonic stem cell state via specific binding to a variant octamer sequence in the regulatory region of the UTF1 locus. Mol Cell Biol. 2005, 25: 5084-5094. 10.1128/MCB.25.12.5084-5094.2005.
Article
PubMed Central
CAS
PubMed
Google Scholar
Zhang J, Tam WL, Tong GQ, Wu Q, Chan H-Y, Soh B-S, Lou Y, Yang J, Ma Y, Chai L, Ng H-H, Lufkin T, Robson P, Lim B: Sall4 modulates embryonic stem cell pluripotency and early embryonic development by the transcriptional regulation of Pou5f1. Nat Cell Biol. 2006, 8: 1114-1123. 10.1038/ncb1481.
Article
CAS
PubMed
Google Scholar
Ivanova N, Dobrin R, Lu R, Kotenko I, Levorse J, DeCoste C, Schafer X, Lun Y, Lemischka IR: Dissecting self-renewal in stem cells with RNA interference. Nature. 2006, 442: 533-538. 10.1038/nature04915.
Article
CAS
PubMed
Google Scholar
Wang J, Rao S, Chu J, Shen X, Levasseur DN, Theunissen TW, Orkin SH: A protein interaction network for pluripotency of embryonic stem cells. Nature. 2006, 444: 364-368. 10.1038/nature05284.
Article
CAS
PubMed
Google Scholar
Dang DT, Pevsner J, Yang VW: The biology of the mammalian Krüppel-like family of transcription factors. Int J Biochem Cell Biol. 2000, 32: 1103-1121. 10.1016/S1357-2725(00)00059-5.
Article
PubMed Central
CAS
PubMed
Google Scholar
Kaczynski J, Cook T, Urrutia R: Sp1- and Krüppel-like transcription factors. Genome Biol. 2003, 4: 206.1-206.8. 10.1186/gb-2003-4-2-206.
Article
Google Scholar
Bruce SJ, Gardiner BB, Burke LJ, Gongora MM, Grimmond SM, Perkins AC: Dynamic transcription programs during ES cell differentiation towards mesoderm in serum versus serum-free BMP4 culture. BMC Genomics. 2007, 8: 365-10.1186/1471-2164-8-365.
Article
PubMed Central
PubMed
Google Scholar
Takahashi K, Yamanaka S: Induction of pluripotent stem cells from mouse embryonic and adult fibroblast cultures by defined factors. Cell. 2006, 126: 663-676. 10.1016/j.cell.2006.07.024.
Article
CAS
PubMed
Google Scholar
Nakagawa M, Koyanagi M, Tanabe K, Takahashi K, Ichisaka T, Aoi T, Okita K, Mochiduki Y, Takizawa N, Yamanaka S: Generation of induced pluripotent stem cells without Myc from mouse and human fibroblasts. Nat Biotechnol. 2008, 26: 101-106. 10.1038/nbt1374.
Article
CAS
PubMed
Google Scholar
Jiang J, Chan YS, Loh YH, Cai J, Tong GQ, Lim CA, Robson P, Zhong S, Ng HH: A core Klf circuitry regulates self-renewal of embryonic stem cells. Nat Cell Biol. 2008, 10: 353-360. 10.1038/ncb1698.
Article
PubMed
Google Scholar
Parisi S, Passaro F, Aloia L, Manabe I, Nagai R, Pastore L, Russo T: Klf5 is involved in self-renewal of mouse embryonic stem cells. J Cell Sci. 2008, 121: 2629-2634. 10.1242/jcs.027599.
Article
CAS
PubMed
Google Scholar
Ema M, Mori D, Niwa H, Hasegawa Y, Yamanaka Y, Hitoshi S, Mimura J, Kawabe Y, Hosoya T, Morita M, Shimosato D, Uchida K, Suzuki N, Yanagisawa J, Sogawa K, Rossant J, Yamamoto M, Takahashi S, Fujii-Kuriyama Y: Krüppel-like factor 5 is essential for blastocyst development and the normal self-renewal of mouse ESCs. Cell Stem Cell. 2008, 3: 555-567. 10.1016/j.stem.2008.09.003.
Article
CAS
PubMed
Google Scholar
Nandan MO, Yang VW: The role of Krüppel-like factors in the reprogramming of somatic cells to induced pluripotent stem cells. Histol Histopathol. 2009, 24: 1343-55.
PubMed Central
CAS
PubMed
Google Scholar
Ohnishi S, Laub F, Matsumoto N, Asaka M, Ramirez F, Yoshida T, Terada M: Developmental expression of the mouse gene coding for the Krüppel-like transcription factor KLF5. Dev Dyn. 2000, 217: 421-429. 10.1002/(SICI)1097-0177(200004)217:4<421::AID-DVDY9>3.0.CO;2-1.
Article
CAS
PubMed
Google Scholar
Conkright MD, Wani MA, Anderson KP, Lingrel JB: A gene encoding an intestinal-enriched member of the Krüppel-like factor family expressed in intestinal epithelial cells. Nucleic Acids Res. 1999, 27: 1263-1270. 10.1093/nar/27.5.1263.
Article
PubMed Central
CAS
PubMed
Google Scholar
Watanabe N, Kurabayashi M, Shimomura Y, Kawai-Kowase K, Hoshino Y, Manabe I, Watanabe M, Aikawa M, Kuro-o M, Suzuki T, Yazaki Y, Nagai R: BTEB2, a Krüppel-like transcription factor, regulates expression of the SMemb/Nonmuscle myosin heavy chain B (SMemb/NMHC-B) gene. Circ Res. 1999, 85: 182-191.
Article
CAS
PubMed
Google Scholar
Matoba R, Niwa H, Masui S, Ohtsuka S, Carter MG, Sharov AA, Ko MS: Dissecting Oct3/4-regulated gene networks in embryonic stem cells by expression profiling. PLoS One. 2006, 1: e26-10.1371/journal.pone.0000026.
Article
PubMed Central
PubMed
Google Scholar
Ying QL, Nichols J, Chambers I, Smith A: BMP induction of Id proteins suppresses differentiation and sustains embryonic stem cell self-renewal in collaboration with STAT3. Cell. 2003, 115: 281-292. 10.1016/S0092-8674(03)00847-X.
Article
CAS
PubMed
Google Scholar
Khalfallah O, Rouleau M, Barbry P, Bardoni B, Lalli E: Dax-1 knockdown in mouse embryonic stem cells induces loss of pluripotency and multilineage differentiation. Stem Cells. 2009, 27: 1529-1537. 10.1002/stem.78.
Article
CAS
PubMed
Google Scholar
Oka M, Tagoku K, Russell TL, Nakano Y, Hamazaki T, Meyer EM, Yokota T, Terada N: CD9 is associated with leukemia inhibitory factor-mediated maintenance of embryonic stem cells. Mol Biol Cell. 2002, 4: 1274-81. 10.1091/mbc.02-01-0600.
Article
Google Scholar
Nakatake Y, Fukui N, Iwamatsu Y, Masui S, Takahashi K, Yagi R, Yagi K, Miyazaki J, Matoba R, Ko MS, Niwa H: Klf4 cooperates with Oct3/4 and Sox2 to activate the Lefty1 core promoter in embryonic stem cells. Mol Cell Biol. 2006, 26: 7772-82. 10.1128/MCB.00468-06.
Article
PubMed Central
CAS
PubMed
Google Scholar
Sekkaï D, Gruel G, Herry M, Moucadel V, Constantinescu SN, Albagli O, Tronik-Le Roux D, Vainchenker W, Bennaceur-Griscelli A: Microarray analysis of LIF/Stat3 transcriptional targets in embryonic stem cells. Stem Cells. 2005, 23: 1634-42. 10.1634/stemcells.2005-0182.
Article
PubMed
Google Scholar
Turner J, Crossley M: Mammalian Krüppel-like transcription factors: more than just a pretty finger. Trends Biochem Sci 2. 1999, 4: 236-40. 10.1016/S0968-0004(99)01406-1.
Article
Google Scholar
Sur I, Rozell B, Jaks V, Bergström A, Toftgård R: Epidermal and craniofacial defects in mice overexpressing Klf5 in the basal layer of the epidermis. J Cell Sci. 2006, 119: 3593-3601. 10.1242/jcs.03070.
Article
CAS
PubMed
Google Scholar
Bourillot PY, Aksoy I, Schreiber V, Wianny F, Schulz H, Hummel O, Hubner N, Savatier P: Novel STAT3 target genes exert distinct roles in the inhibition of mesoderm and endoderm differentiation in cooperation with Nanog. Stem Cells. 2009, 27: 1760-1771. 10.1002/stem.110.
Article
CAS
PubMed
Google Scholar
Kuo CT, Veselits ML, Leiden JM: LKLF: A transcriptional regulator of single-positive T cell quiescence and survival. Science. 1997, 277: 1986-1990. 10.1126/science.277.5334.1986.
Article
CAS
PubMed
Google Scholar
Segre JA, Bauer C, Fuchs E: Klf4 is a transcription factor required for establishing the barrier function of the skin. Nat Genet. 1999, 22: 356-360. 10.1038/11926.
Article
CAS
PubMed
Google Scholar
Singla DK, Sun B: Transforming growth factor-β2 enhances differentiation of cardiac myocytes from embryonic stem cells. Biochem Biophys Res Commun. 2005, 332: 135-141. 10.1016/j.bbrc.2005.04.098.
Article
PubMed
Google Scholar
Morizane R, Monkawa T, Itoh H: Differentiation of murine embryonic stem and induced pluripotent stem cells to renal lineage in vitro. Biochem Biophys Res Commun. 2009, 390: 1334-1339. 10.1016/j.bbrc.2009.10.148.
Article
CAS
PubMed
Google Scholar
Ernst M, Gearing DP, Dunn AR: Functional and biochemical association of Hck with the LIF/IL-6 receptor signal transducing subunit gp130 in embryonic stem cells. EMBO J. 1994, 13: 1574-1584.
PubMed Central
CAS
PubMed
Google Scholar
Goumans MJ, Ward-van Oostwaard D, Wianny F, Savatier P, Zwijsen A, Mummery C: Mouse embryonic stem cells with aberrant transforming growth factor β signalling exhibit impaired differentiation in vitro and in vivo. Differentiation. 1998, 63: 101-113. 10.1046/j.1432-0436.1998.6330101.x.
Article
CAS
PubMed
Google Scholar
Takeda N, Manabe I, Uchino Y, Eguchi K, Matsumoto S, Nishimura S, Shindo T, Sano M, Otsu K, Snider P, Conway SJ, Nagai R: Cardiac fibroblasts are essential for the adaptive response of the murine heart to pressure overload. J Clin Invest. 2010, 120: 254-265. 10.1172/JCI40295.
Article
PubMed Central
CAS
PubMed
Google Scholar
Antonini D, Rossi B, Han R, Minichiello A, Di Palma T, Corrado M, Banfi S, Zannini M, Brissette JL, Missero C: An autoregulatory loop directs the tissue-specific expression of p63 through a long-range evolutionarily conserved enhancer. Mol Cell Biol. 2006, 26: 308-318. 10.1128/MCB.26.8.3308-3318.2006.
Article
Google Scholar
Li C, Wong WH: Model-based analysis of oligonucleotide arrays: expression index computation and outlier detection. Proc Natl Acad Sci USA. 2001, 98: 31-36. 10.1073/pnas.011404098.
Article
PubMed Central
CAS
PubMed
Google Scholar
Frank O, Heim M, Jakob M, Barbero A, Schafer D, Bendik I, Dick W, Heberer M, Martin I: Real-time quantitative RT-PCR analysis of human bone marrow stromal cells during osteogenic differentiation in vitro. J Cell Biochem. 2002, 85: 737-746. 10.1002/jcb.10174.
Article
CAS
PubMed
Google Scholar
Langmead B, Trapnell C, Pop M, Salzberg SL: Ultrafast and memory-efficient alignment of short DNA sequences to the human genome. Genome Biol. 2009, 10: R25-10.1186/gb-2009-10-3-r25.
Article
PubMed Central
PubMed
Google Scholar
Zhang Y, Liu T, Meyer CA, Eeckhoute J, Johnson DS, Bernstein B, Nusbaum C, Myers RM, Brown M, Li W, Liu XS: Model-based analysis of ChIP-Seq (MACS). Genome Biol. 2008, 9: R137-10.1186/gb-2008-9-9-r137.
Article
PubMed Central
PubMed
Google Scholar
Sharov AA, Ko MS: Exhaustive search for over-represented DNA sequence motifs with CisFinder. DNA Res. 2009, 16: 261-273. 10.1093/dnares/dsp014.
Article
PubMed Central
CAS
PubMed
Google Scholar